Links

Here we provide related web links:

COVID-19 outbreak and epidemic links:

• COVID-19 Dashboard by Johns Hopkins University
• COVID-19 Global Cases by John Hopkins University
• COVID-19 info by CDC
• WHO COVID-19 links:
  • Coronavirus disease (COVID-19) outbreak
  • Situation reports
  • Linked out from WHO: COVID-19 situation dashboard
• Dynamic COVID-19 record (Chinese) from baidu.com.
• COVID Community Vulnerability Map
• The Institute for Health Metrics and Evaluation at the University of Washington, provides a leading model of the COVID-19 epidemic.
• Google COVID-19 Map
• COVID-19 in US and Canada dynamic statistics from 1point3aces.com.

COVID-19 resources:

• CORD-19: A free resource provided by the Allen Institute for AI partnered with leading research groups that includes over 45,000 scholarly articles, including over 33,000 with full text, about COVID-19 and the coronavirus family of viruses for use by the global research community.
• https://github.com/fhircat/CORD-19-on-FHIR: Semantics for COVID-19 Discovery?
• SARS-CoV-2 data and literature resources

Funding opportunities:

• General:
• COVID-19 Resource Guides by University of Michigan Library
• COVID-19 related funding opportunities (organized by UM Research office)
• https://covid19.nih.gov/funding/open-funding-opportunities
• Specific:
• Funding: https://fastgrants.org: Quick turnaround funding opportunity for COVID-19 research is just posted. Grants of $10K - $500K are available to support ongoing projects that could help with the COVID-19 pandemic within the next 6 months. Decisions are made within 48 hours.
• MIDAS funding (Deadline: April 30; maximum 30K)
• NIAID administrative supplements: https://www.niaid.nih.gov/grants-contracts/updates-niaid-funding-coronavirus-research. The FOA has details on the length (no more than 2 years) and budget.
• NIAID administrative supplements to existing grants focused on open science: https://www.niaid.nih.gov/grants-contracts/supplement-software-tools   
• Canada Operating Grant: COVID-19 May 2020 Rapid Research Funding Opportunity
• PAR-20-177, Emergency Awards: Rapid Investigation of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Coronavirus Disease 2019 (COVID-19) (R21, Clinical Trial Not Allowed)
• PAR-20-178, Emergency Awards: Rapid Investigation of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Coronavirus Disease 2019 (COVID-19) (R01, Clinical Trial Not Allowed)

Biomedical Ontologies:

Ontologies in OBO Foundry: http://www.obofoundry.org

• CARO: Common Anatomy Reference Ontology: http://www.obofoundry.org/cgi-bin/detail.cgi?id=caro
• CHEBI: Chemical Entities of Biological Interest: http://chebi.wiki.sourceforge.net/
• CL: Cell Type Ontology: http://www.obofoundry.org/cgi-bin/detail.cgi?id=cell
• DOID: Human Disease Ontology: http://diseaseontology.sourceforge.net/
• ENVO: Environment Ontology: http://environmentontology.org/
• GO: Gene Ontology: http://www.geneontology.org
• IDO: Infectious Disease Ontology: http://www.bioontology.org/wiki/index.php/Infectious_Disease_Ontology
• NCBITaxon: NCBI Taxonomy: http://www.ncbi.nlm.nih.gov/Taxonomy/
• MP: Mammalian Phenotype Ontology: http://www.informatics.jax.org/searches/MP_form.shtml
• OBI: Ontology for Biomedical Investigations: http://obi-ontology.org
• PATO: Phenotypic Quality Ontology: http://www.obofoundry.org/cgi-bin/detail.cgi?id=quality
• PRO: Protein Ontology: http://www.obofoundry.org/cgi-bin/detail.cgi?id=protein
• SO: Sequence Ontology: http://www.sequenceontology.org/
• VO: Vaccine Ontology: http://www.violinet.org/vaccineontology

Tools:

• Protege ontology editor: http://protege.stanford.edu/
• NCBO BioPortal: http://bioportal.bioontology.org/
• OWLAPI: http://owlapi.sourceforge.net/