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BBP (Brucella)

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Phinfo: Pathogen-Host Interaction Information

Phinfo is a MySQL-based module that stores pathogen and pathogen-host interaction information curated from biomedical literature or other curated data sources. A powerful search engine is also developed here. Boolean mode is supported, and the default mode is AND. A query of "brucella OR anthracis" searches records contains "brucella" or "anthracis".

Note: For advanced topic search, click here.

NIAID Category A Bacillus anthracis Clostridium botulinum Ebola Virus Francisella tularensis Guanarito Virus Junin Virus Lassa Virus Machupo Virus Marburg Virus Measles virus Rift Valley Fever Virus Variola Virus Yersinia pestis NIAID Category C Crimean-Congo Hemorrhagic Fever Virus Mycobacterium tuberculosis Rickettsia prowazekii Rickettsia rickettsii Yellow Fever virus

NIAID Category B Brucella melitensis Burkholderia mallei Burkholderia pseudomallei Coxiella burnetii Cryptosporidium parvum Eastern Equine Encephalitis Virus Escherichia coli O157:H7 Salmonella spp. Shigella spp. Venezuelan Equine Encephalitis Virus Others Coccidioides immitis Foot and Mouth Disease Virus Human immunodeficiency virus (HIV) Louping ill virus Newcastle Disease Virus Phakopsora pachyrhizi Plasmodium falciparum Powassan virus

Statisitcs: The Phinfo module stores 36 pathogens, including 2894 references (1384 journals,136 books,1370 websites and 4 theses).

Provenance: The data in Phinfo were originally extracted from existing databases including the VBI PathInfo project via its web service, the HazARD project done in the University of Michigan, or manually curated from peer-reviewed literature by the PHIDIAS curation team. The visualization program was developed by the PHIDIAS development team.

References:

He Y, Vines RR, Wattam AR, Abramochkin GV, Dickerman AW, Eckart JD, Sobral BW. PIML: the Pathogen Information Markup Language. Bioinformatics. 2005 Jan 1;21(1):116-21. PMID: 15297293.

For HazARD: He Y, Rush HG, Liepman RS, Xiang Z, Colby LA. Pathobiology and management of laboratory rodents administered CDC Category A agents. Comparative Medicine. 2007. Feb;57(1):18-32. PMID: 17348288.