<%@ taglib uri="/WEB-INF/struts-logic.tld" prefix="logic" %> <%@ taglib uri="/WEB-INF/tairtags.tld" prefix="tair" %> <%@ taglib uri="/WEB-INF/input.tld" prefix="input"%> <%@ page import="java.util.*,pub.utils.*" %> <%@ page import="pub.beans.*, pub.servlets.*, pub.db.*" %> "/> <% bgColor.next(); %> <%-- Header --%> <% HashMap unitsChoices = new HashMap(); unitsChoices.put("bp","bp"); unitsChoices.put("kb","kb"); unitsChoices.put("",""); %> <% String pub_allele_id = allele_bean.getPub_allele_id(); %>

> > > <% if (allele_bean.getTair_object_id ()!=null && (allele_bean.getTair_object_id ().trim().length() > 0) ){ %> > <% } %> > > > > > > > > > > > colspan="100%" > <% String geneColor = bgColor.next(); %> > > <% String germplasmColor = bgColor.next(); %> > > > > > colspan="100%" > > > > colspan=100% > >
Allele Display And Update [help]
 
Allele Name  
Pub Allele Id   <%= allele_bean.getPub_allele_id() %>
Tair Object Id    <%= allele_bean.getTair_object_id() %>
Type   " />
Inheritance   " />
Polymorphic Sequence  
lengths units
Insertion Type   " />
Construct Type   " />
Deletion Type  
Allele Mode   " />
Mutation Site   " />
Mutagen   " />
State Number   <%= allele_bean.getState_number() %>
Flanking Sequence  
sequence 1  
sequence 2  
Description  
Related Genes     <% String relationship = "updateGeneLink_"+linkingId+"_relationship"; String genefeature = "updateGeneLink_"+linkingId+"_genefeature"; String obsolete = "updateGeneLink_"+linkingId+"_obsolete"; %>
name   relationship type   mutation site   is_obsolete   updated by/date
<%= link.getPub_gene_name() %>    <%= link.getRelationship_type() %>    <% String feature_site =link.getGene_feature_site(); if ( StringUtils.isEmpty(feature_site) ){ feature_site = "unknown"; } %>       <% if(link.getUpdated_by() != null && link.getUpdated_by().trim().length()>0 ){ %> <%= user.getFullname() %> / <%= link.getDate_updated() %> <% } %>  
Add Gene to this Allele    
name    Relationship type    mutation site
   is_an_allele_of <%-- --%>   
Related Germplasms     <% String genotype = "updateGermplasmLink_"+linkingId+"_genotype"; String segragation = "updateGermplasmLink_"+linkingId+"_segregation"; String obsolete = "updateGermplasmLink_"+linkingId+"_obsolete"; String germplasm_id = link.getPub_germplasm_id(); %>
name    Genotype    Segregation_ratio    is_obsolete    updated by/date
<%= link.getPub_germplasm_name() %>    <% String link_genotype = link.getGenotype(); if ( StringUtils.isEmpty(link_genotype) ){ link_genotype = " "; } %>          <% if(link.getUpdated_by() != null && link.getUpdated_by().trim().length()>0 ){ %> <%= user.getFullname() %> / <%= link.getDate_updated() %> <% } %>  
Phenotype: <% String pLinkingId = null; for ( int i = 0 ; i< germplasm_bean.getLinking_ids_to_phenotype ().size(); i++ ){ pLinkingId = (String)(germplasm_bean.getLinking_ids_to_phenotype ().get(i)); if (i > 0 ){ %>
<% } %> <%= StringUtils.protectFormValue(pheno_link.getPub_phenotype()) %>
<% } %>
Add Germplasm to this Allele (TAIR germplasm search)    
(set id by inputting name under and click me)   Germplasm
Id		   Genotype    Segregation_ratio
        
Didn't see the germplasm you are searching for? Add Here
Allele is Obsolete  
Replaced By (use pub_allele_id)  
Aliases   "/>
Add New Alias   
name    type   note
    
Entered By/Date   <%= user.getFullname() %> / <%= allele_bean.getDate_entered() %>  
Updated By/Date   <%= user.getFullname() %> / <%= allele_bean.getDate_updated() %>  
Attributions   "/>  
  Add New Attribution
 
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