<%@ taglib uri="/WEB-INF/struts-logic.tld" prefix="logic" %> <%@ taglib uri="/WEB-INF/tairtags.tld" prefix="tair" %> <%@ taglib uri="/WEB-INF/input.tld" prefix="input"%> <%@ page import="pub.beans.*, java.util.*, pub.utils.*" %> <% bgColor.next(); %> <% pub.db.choices.GeneModelTypeChoices modelTypeChoices = (pub.db.choices.GeneModelTypeChoices) request.getAttribute("modelTypeChoices"); GeneBean geneBean = (GeneBean) request.getAttribute("geneBean"); java.util.Map objectTypes = (Map) request.getAttribute("objectTypes"); TreeMap nameTypes = nameTypeChoices.choiceAsMap(); TreeMap modelTypes = modelTypeChoices.choiceAsMap(); TreeMap chromosomes = chromosomeChoices.choiceAsMap(); %> <%-- Add the callback hooks for clicking and sending things back to the caller. --%>

Gene Update:<%= StringUtils.htmlEntityQuote(geneBean.getName()) %> ( gene id <%= geneBean.getId() %> aka <%= geneBean.getTermBean().getPubAccession() %>) (object_type:<%= geneBean.getObject_type() %>)

Jump to: [ Main Attributes / Locus Association / Annotations / Allele Associations / Alias Associations / Sequence Associations / Comments ]

Main Attributes

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<%-- if this bean replaces other beans, let's show those beans --%> <% if (geneBean.getReplacedBeans().size() > 0) { %> > <% } %> <%-- Alternatively, if this bean has been replaced, let's show that. --%> <% if (geneBean.getReplaced_by() != null && geneBean.getReplaced_by().length() > 0) { %> > <% } %> > colspan="100%" > colspan="100%" > colspan="100%" > colspan="100%" > <% if (geneBean.getGene_tair_obj_id() != null && geneBean.getGene_tair_obj_id().length() > 0) { %> colspan="100%" > <% } %> colspan="100%" > > colspan="100%" > colspan="100%" > colspan="100%" > > colspan="100%" > colspan="100%"> colspan="100%" > colspan="100%" > colspan="100%" > <% this_choice = geneBean.getIs_verified().toLowerCase(); if (this_choice.length()<=0){ this_choice=""; } %> colspan="100%" > colspan="100%" > >

Replaces

**Warning** Replaced by

UpdateHistory

"/>

Last updated_by/date

<%= user.getFullname() %> / <%= geneBean.getDate_updated() %>

Submitted By(put community_id)

Name

			Name type				Is Splice Variant

Gene Model Type

Object type

Is Obsolete

			<% if (geneBean.getReplaced_by() != null && geneBean.getReplaced_by().length() > 0 ) { %> Replaced By(pub_gene_id) <% } else { %> Replaced By(pub_gene_id) <% } %>				Is Temp

TAIR Accession

Tair:<%= geneBean.getGene_tair_obj_id() %>

Pub_gene_id

<%= geneBean.getPub_gene_id() %>

term_id: <%= geneBean.getTermBean().getId() %>

Associated to <%= geneBean.getHitIds().size() %> references

Pub Reference Ids

[ Validate Hits]

Add Article Id as Hit:

NLP Articles

Summary

The summary of a gene

Description

The detailed descriptions of a gene

Chromosome

Is Sequenced

<% String this_choice = geneBean.getIs_sequenced().toLowerCase(); if (this_choice.length()<=0){ this_choice=""; } %>

Is Verified

Is Predicted

<% this_choice = geneBean.getIs_predicted().toLowerCase(); if (this_choice.length()<=0){ this_choice=""; } %>

Verification method

Locus Association

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GO Annotations

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GO Annotations (Add GO annotation)

Allele Associations

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Alias Associations

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Sequence Associations

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<% String sequence_class = null; for (int i =0; i< geneBean.getSequenceClassTypes().size(); i++){ sequence_class = (String)(geneBean.getSequenceClassTypes().get(i)); if (sequence_class != null && ! sequence_class.trim().equals("") ){ %> <% }} %> colspan=100% > >

Comments	<%-- Display a list of the comments associated with this gene. --%> "/>

Comments

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