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Full list of ontologies included in Ontofox.

# Ontology Ontology Full Name Term URI example
1 AAO Amphibian gross anatomy http://purl.obolibrary.org/obo/AAO_0000169
2 ADO Alzheimer's Disease Ontology
3 ADW Animal natural history and life history
4 AEO Anatomical Entity Ontology http://purl.obolibrary.org/obo/AEO_0000212
5 AERO Adverse Event Reporting Ontology http://purl.obolibrary.org/obo/AERO_0000258
6 AFO Allotrope Foundation Ontology
7 AfPO African Population Ontology
8 AGRO Agronomy Ontology
9 AISM Ontology for the Anatomy of the Insect SkeletoMuscular system (AISM)
10 AMPHX The Amphioxus Development and Anatomy Ontology
11 APO Ascomycete phenotype ontology http://purl.obolibrary.org/obo/APO_0000108
12 APOLLO_SV Apollo Structured Vocabulary
13 ARG_clinical_encounter_module ARG clinical encounter module http://purl.obolibrary.org/obo/arg/icdcode/192_2
14 ARO Antibiotic Resistance Ontology
15 ATO Amphibian taxonomy http://purl.obolibrary.org/obo/ATO_0000011
16 BAO BioAssay Ontology
17 BCGO Beta Cell Genomics Ontology http://purl.obolibrary.org/obo/BCGO_0000055
18 BCO Biological Collections Ontology http://purl.obolibrary.org/obo/bco_0000033
19 BFO Basic Formal Ontology http://purl.obolibrary.org/obo/BFO_0000001
20 BFO11 Basic Formal Ontology (BFO) 1.1 http://www.ifomis.org/bfo/1.1/snap#Quality
21 BILA Bilateria anatomy http://purl.obolibrary.org/obo/BILA_0000035
22 BMONT Biomarker Ontology
23 BOOTStrep Gene Regulation Ontology
24 BSPO Biological Spatial Ontology http://purl.obolibrary.org/obo/BSPO_0000039
25 BTO BRENDA tissue / enzyme source http://purl.obolibrary.org/obo/BTO_0000188
26 CARO Common Anatomy Reference Ontology http://purl.obolibrary.org/obo/CARO_0000042
27 CCFO Common Coordinate Framework Ontology
28 CCFO-Slim Common Coordinate Framework (CCF) Ontology (slim version)
29 CDAO Comparative Data Analysis Ontology http://purl.obolibrary.org/obo/CDAO_0000034
30 CDNO Compositional Dietary Nutrition Ontology
31 CEPH Cephalopod Ontology
32 CHEBI Chemical Entities of Biological Interest http://purl.obolibrary.org/obo/CHEBI_18379
33 CHEMINF Chemical Information Ontology http://semanticscience.org/resource/CHEMINF_000090
34 CHIRO CHEBI Integrated Role Ontology
35 CHMO Chemical Methods Ontology
36 CIDO Coronavirus Infectious Disease Ontology
37 CIO Confidence Information Ontology
38 CL Cell Ontology http://purl.obolibrary.org/obo/CL_0000076
39 CLAO Collembola Anatomy Ontology
40 CLO Cell Line Ontology http://purl.obolibrary.org/obo/CLO_0000526
41 CLO-hPSCreg Cell Line Ontology - Human Pluripotent Stem Cell Registry
42 CLO-NICR Cell Line Ontology - Chinese National Infrastructure of Cell Line Resource
43 CLYH Clytia hemisphaerica Development and Anatomy Ontology
44 CMF CranioMaxilloFacial ontology
45 CMO Clinical measurement ontology http://purl.obolibrary.org/obo/CMO_0000116
46 COB Core Ontology for Biology and Biomedicine
47 COLAO Coleoptera Anatomy Ontology (COLAO)
48 CRO Contributor Role Ontology
49 CTCAE-OAEview OAE CTCAE view
50 CTENO Ctenophore Ontology
51 CTO CTO: Core Ontology of Clinical Trials
52 CVDO Cardiovascular Disease Ontology http://purl.obolibrary.org/obo/CVDO_0000169
53 d-acts Ontology of Document Acts
54 DC_CL Dendritic cell http://purl.obolibrary.org/obo/DC_CL_0000021
55 DDANAT Dictyostelium discoideum anatomy http://purl.obolibrary.org/obo/DDANAT_0000063
56 DDPHENO Dictyostelium discoideum phenotype ontology
57 DIDEO Drug-drug Interaction and Drug-drug Interaction Evidence Ontology
58 DINTO The Drug-Drug Interactions Ontology
59 DISDRIV Disease Drivers Ontology
60 DOID Human Disease Ontology http://purl.obolibrary.org/obo/DOID_0050305
61 DRON The Drug Ontology http://purl.obolibrary.org/obo/dron#DRON_00010073
62 DUO Data Use Ontology
63 ECAO The Echinoderm Anatomy and Development Ontology
64 ECO Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/ECO_0000321
65 ECOCORE An ontology of core ecological entities
66 ECTO Environmental conditions, treatments and exposures ontology
67 EDAM EMBRACE Data and Methods http://edamontology.org/data_1012
68 EFO Experimental Factor Ontology http://www.ebi.ac.uk/efo/EFO_0000408
69 EHDA Human developmental anatomy, timed version http://purl.obolibrary.org/obo/EHDA_10008
70 EHDAA Human developmental anatomy, abstract version http://purl.obolibrary.org/obo/EHDAA_1725
71 EHDAA2 Human developmental anatomy, abstract http://purl.obolibrary.org/obo/EHDAA2_0001157
72 EMAP Mouse gross anatomy and development, timed http://purl.obolibrary.org/obo/EMAP_10198
73 EMAPA Mouse Developmental Anatomy Ontology http://purl.obolibrary.org/obo/EMAPA_16236
74 ENVO Environment Ontology http://purl.obolibrary.org/obo/ENVO_00000046
75 EO Plant Environment Ontology http://purl.obolibrary.org/obo/EO_0007118
76 EPIO Epilepsy Ontology
77 EPO Epidemiology Ontology http://epidemiology_ontology.owl#EO:0000063
78 ERO eagle-i resource ontology http://purl.obolibrary.org/obo/ERO_0001402
79 EUPATH VEuPathDB ontology
80 EV eVOC (Expressed Sequence Annotation for Humans)
81 ExO Exposure ontology
82 FAO Fungal gross anatomy http://purl.obolibrary.org/obo/FAO_0000033
83 FBbi Biological Imaging Methods Ontology http://purl.obolibrary.org/obo/FBbi_00000016
84 FBbt Drosophila gross anatomy http://purl.obolibrary.org/obo/FBbt_00000055
85 FBcv FlyBase Controlled Vocabulary
86 FBcv Drosophila Phenotype Ontology
87 FBdv Drosophila development http://purl.obolibrary.org/obo/FBdv_00005293
88 FBsp Fly taxonomy http://purl.obolibrary.org/obo/FBsp_00001179
89 FIDEO Food Interactions with Drugs Evidence Ontology
90 FIX Physico-chemical methods and properties http://purl.obolibrary.org/obo/FIX_0000543
91 FLOPO Flora Phenotype Ontology
92 FLU Influenza Ontology http://purl.obolibrary.org/obo/FLU_0001035
93 FMA Foundational Model of Anatomy Ontology (subset) http://purl.obolibrary.org/obo/FMA_27742
94 FOBI Food-Biomarker Ontology
95 FOODON Food Ontology
96 FOVT FuTRES Ontology of Vertebrate Traits
97 FYPO Fission Yeast Phenotype Ontology http://purl.obolibrary.org/obo/FYPO_0002258
98 GALLONT Plant Gall Ontology
99 GAZ Gazetteer
100 GECKO Genomics Cohorts Knowledge Ontology
101 GENEPIO Genomic Epidemiology Ontology
102 GENO Genotype Ontology
103 GEO Geographical Entity Ontology
104 GNO Glycan Naming and Subsumption Ontology (GNOme)
105 GO Gene Ontology http://purl.obolibrary.org/obo/GO_0000439
106 GRO Cereal Plant Gross Anatomy
107 GSSO Gender, Sex, and Sexual Orientation (GSSO) ontology
108 HABRONATTUS Habronattus courtship
109 HANCESTRO Human Ancestry Ontology
110 HAO Hymenoptera Anatomy Ontology http://purl.obolibrary.org/obo/HAO_0000115
111 HINO Human Interaction Network Ontology http://purl.obolibrary.org/obo/HINO_0010014
112 HOM Homology Ontology http://purl.obolibrary.org/obo/HOM_0000027
113 HP Human Phenotype Ontology (HPO) http://purl.obolibrary.org/obo/HP_0008736
114 HsapDv Human Developmental Stages
115 HSO Health Surveillance Ontology
116 HTN Hypertension Ontology
117 IAO Information Artifact Ontology http://purl.obolibrary.org/obo/IAO_0000037
118 IAO-Onto-Meta IAO Ontology Metadata
119 ICDO International Classification of Disease Ontology
120 ICEO Integrative and Conjugative Element Ontology
121 ICO Informed Consent Ontology http://purl.obolibrary.org/obo/ICO_0000042
122 IDO Infectious Disease Ontology http://purl.obolibrary.org/obo/IDO_0000558
123 IDOBRU Brucellosis Ontology http://purl.obolibrary.org/obo/IDO_0100160
124 IDOMAL Malaria Ontology http://purl.obolibrary.org/obo/IDOMAL_0000416
125 IEV Event (INOH pathway ontology) http://purl.obolibrary.org/obo/IEV_0000128
126 IMR Molecule role (INOH Protein name/family name ontology) http://purl.obolibrary.org/obo/IMR_0000067
127 INO Interaction Network Ontology http://purl.obolibrary.org/obo/INO_0000605
128 IPR Protein Domains
129 KISAO Kinetic Simulation Algorithm Ontology
130 KTAO Kidney Tissue Atlas Ontology
131 LABO clinical LABoratory Ontology
132 LEPAO Lepidoptera Anatomy Ontology
133 LINCS-CLOview CLO LINCS view
134 LiPrO Lipid Ontology
135 LOGGERHEAD Loggerhead nesting
136 LTHIDO LTHIDO
137 MA Mouse adult gross anatomy http://purl.obolibrary.org/obo/MA_0000157
138 MAMO Mathematical modeling ontology
139 MAO Multiple alignment
140 MAT Minimal anatomical terminology http://purl.obolibrary.org/obo/MAT_0000171
141 MAXO Medical Action Ontology
142 MCO Microbial Conditions Ontology
143 MCRO Model Card Report Ontology
144 MF Mental Functioning Ontology http://purl.obolibrary.org/obo/MF_0000003
145 MFMO Mammalian Feeding Muscle Ontology
146 MFO Medaka fish anatomy and development
147 MFOEM Emotion Ontology http://purl.obolibrary.org/obo/MFOEM_000039
148 MFOMD Mental Disease Ontology
149 MI Molecular Interactions Controlled Vocabulary http://purl.obolibrary.org/obo/MI_0659
150 MIAPA MIAPA Ontology http://purl.obolibrary.org/obo/MIAPA_0000022
151 MICRO Ontology of Prokaryotic Phenotypic and Metabolic Characters
152 miRNAO microRNA Ontology http://purl.obolibrary.org/obo/NCBITaxon_73382
153 MIRO Mosquito insecticide resistance http://purl.obolibrary.org/obo/MIRO_00000005
154 MMO Measurement method ontology http://purl.obolibrary.org/obo/MMO_0000091
155 MmusDv Mouse Developmental Stages
156 MO Microarray experimental conditions http://mged.sourceforge.net/ontologies/MGEDOntology.owl#FactorValueDependency
157 MOD Protein modification http://purl.obolibrary.org/obo/MOD_00670
158 MONDO Mondo Disease Ontology
159 MOP Molecular Process Ontology
160 MP Mammalian Phenotype Ontology http://purl.obolibrary.org/obo/MP_0000202
161 MPATH Mouse pathology ontology
162 MPATH Mouse pathology http://purl.obolibrary.org/obo/MPATH_143
163 MPIO Minimum PDDI Information Ontology
164 MRO MHC Restriction Ontology
165 MS Mass spectrometry ontology http://purl.obolibrary.org/obo/MS_1000039
166 NBO Neuro Behavior Ontology http://purl.obolibrary.org/obo/NBO_0000292
167 NCBITaxon NCBI organismal classification http://purl.obolibrary.org/obo/NCBITaxon_110815
168 NCIT NCI Thesaurus OBO Edition http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C17706
169 ncithesaurus NCI Thesaurus
170 NCRO Non-Coding RNA Ontology
171 NDF-RT National Drug File Reference Terminology http://evs.nci.nih.gov/ftp1/NDF-RT/NDF-RT.owl#N0000000280
172 NFO NFO
173 NGBO Next Generation Biobanking Ontology
174 NIF_Cell NIF Cell http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Cell.owl#nlx_cell_20090201
175 NIF_Dysfunction NIF Dysfunction http://ontology.neuinfo.org/NIF/Dysfunction/NIF-Dysfunction.owl#birnlex_12705
176 NIF_GrossAnatomy NIF Gross Anatomy http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-GrossAnatomy.owl#birnlex_1139
177 NMR NMR-instrument specific component of metabolomics investigations http://msi-ontology.sourceforge.net/ontology/NMR.owl#NMR_400281
178 NOMEN NOMEN - A nomenclatural ontology for biological names
179 OAE Ontology of Adverse Events http://purl.obolibrary.org/obo/OAE_0000019
180 OARCS Ontology of Arthropod Circulatory Systems
181 OBA Ontology of Biological Attributes
182 OBCS Ontology of Biological and Clinical Statistics
183 OBI Ontology for Biomedical Investigations http://purl.obolibrary.org/obo/OBI_0001077
184 OBI-NIAID-GSC-BRC-view OBI NIAID-GSC-BRC view
185 OBIB Ontology for Biobanking
186 OBIws OBI web service, development version http://purl.obolibrary.org/obo/OBIws_0000076
187 OboInOwl OboInOwl OBO Format metamodel
188 OBO_REL OBO relationship types (legacy)
189 OCCO Occupation Ontology
190 OCE Ontology of Chemical Elements
191 OCMR Ontology of Chinese Medicine for Rheumatism
192 OCRe OCRe http://purl.org/net/OCRe/statistics.owl#OCRE200091
193 OCVDAE Ontology of Cardiovascular Drug Adverse Events
194 ODAE Ontology of Drug Adverse Events
195 ODNAE Ontologyof Drug Neuropathy Adverse Events
196 OGG The Ontology of Genes and Genomes
197 OGG-At Ontology of Genes and Genomes - Arabidopsis thaliana
198 OGG-Bac Ontology of Genes and Genomes-Bacteria
199 OGG-Base Ontology of Genes and Genomes-Base
200 OGG-Bru Ontology of Genes and Genomes - Brucella
201 OGG-Ce Ontology of Genes and Genomes - Caenorhabditis elegans
202 OGG-Dm Ontology of Genes and Genomes - Fruit Fly
203 OGG-Dr Ontology of Genes and Genomes - Zebrafish
204 OGG-Hs Ontology of Genes and Genomes-Human
205 OGG-Mm Ontology of Genes and Genomes - Mouse
206 OGG-Pf Ontology of Genes and Genomes - Plasmodium falciparum
207 OGG-Sc Ontology of Genes and Genomes - Yeast
208 OGG-Vir Ontology of Genes and Genomes - Viruses
209 OGI Ontology for genetic interval http://purl.obolibrary.org/obo/OGI_0000004
210 OGMS Ontology for General Medical Science http://purl.obolibrary.org/obo/OGMS_0000015
211 OGSF Ontology of Genetic Susceptibility Factor http://purl.obolibrary.org/obo/OGSF_0001040
212 OHD Oral Health and Disease Ontology http://purl.obolibrary.org/obo/OHD_0000040
213 OHMI Ontology of Host-Microbiome Interactions
214 OHPI Ontology of Host Pathogen Interactions
215 OLAM Ontology of Laboratory Animal Medicine
216 OlatDv Medaka Developmental Stages
217 OLOBO Ontology for Linking Biological and Medical Ontologies
218 OM Ontology of units of Measure
219 OM Ontology of units of Measure
220 OMIABIS Ontologized MIABIS
221 OMIT Ontology for MIRNA Target
222 OMO OBO Metadata Ontology
223 OMP Ontology of Microbial Phenotypes
224 OMRSE Ontology for Modeling and Representation of Social Entities http://purl.obolibrary.org/obo/OMRSE_00000044
225 ONE Ontology for Nutritional Epidemiology
226 ONS Ontology for Nutritional Studies
227 ONTOAVIDA OntoAvida: ontology for Avida digital evolution platform
228 ONTONEO Obstetric and Neonatal Ontology
229 OOSTT Ontology of Organizational Structures of Trauma centers and Trauma systems
230 OPL Ontology for Parasite LifeCycle http://purl.obolibrary.org/obo/OPL_0000215
231 OPMI Ontology of Precision Medicine and Investigation
232 ORNASEQ Ontology of RNA Sequencing
233 OSCI Ontology for Stem Cell Investigations
234 OVAE Ontology of Vaccine Adverse Events http://purl.obolibrary.org/obo/OVAE_0000395
235 PAO Plant Anatomy Ontology
236 PATO Phenotype And Trait Ontology http://purl.obolibrary.org/obo/PATO_0000054
237 PCL Provisional Cell Ontology
238 PCO Population and Community Ontology http://purl.obolibrary.org/obo/PCO_0000019
239 PDRO The Prescription of Drugs Ontology
240 PdumDv Platynereis Developmental Stages
241 PD_ST Platynereis stage ontology
242 PECO Plant Experimental Conditions Ontology
243 PGDSO Plant Growth and Development Stage
244 PHIPO Pathogen Host Interaction Phenotype Ontology
245 PIDO Parasite Infectious Disease Ontology
246 PLANA planaria-ontology
247 PLANP Planarian Phenotype Ontology
248 PLO Plasmodium life cycle
249 PNO Proper Name Ontology
250 PO Plant Ontology http://purl.obolibrary.org/obo/PO_0000059
251 PORO Porifera Ontology http://purl.obolibrary.org/obo/PORO_0000046
252 PPO Plant Phenology Ontology
253 PR PRotein Ontology (PRO) http://purl.obolibrary.org/obo/PR_000000111
254 PROCO Process Chemistry Ontology
255 ProPreO Proteomics data and process provenance http://lsdis.cs.uga.edu/projects/glycomics/propreo#substance_identifier
256 PSDO Performance Summary Display Ontology
257 PSO Plant Stress Ontology
258 PW Pathway ontology http://purl.obolibrary.org/obo/PW_0000152
259 RBO Radiation Biology Ontology
260 Reactome Reactome Ontology
261 REO Reagent Ontology http://purl.obolibrary.org/obo/REO_0000580
262 RESID Protein covalent bond
263 REX Physico-chemical process http://purl.obolibrary.org/obo/REX_0000251
264 RNAO RNA ontology
265 RO Relation Ontology http://purl.obolibrary.org/obo/CARO_0000006
266 ROLEO Role Ontology
267 RS Rat Strain Ontology http://purl.obolibrary.org/obo/RS_0000060
268 RXNO Name Reaction Ontology
269 SAO Subcellular anatomy ontology http://ccdb.ucsd.edu/SAO/1.2#sao915541959
270 SBO Systems Biology Ontology
271 SCDO Sickle Cell Disease Ontology
272 SCO Sustainability Core Ontology
273 SDGIO Sustainable Development Goals Interface Ontology
274 SEP Sample processing and separation techniques http://purl.obolibrary.org/obo/PATO_0001635
275 SEPIO Scientific Evidence and Provenance Information Ontology
276 SIBO Social Insect Behavior Ontology
277 SIO Semanticscience Integrated Ontology
278 SLSO Space Life Sciences Ontology
279 SO Sequence types and features ontology http://purl.obolibrary.org/obo/SO_0000644
280 SOPHARM Suggested Ontology for Pharmacogenomics http://www.loria.fr/~coulet/ontology/sopharm/version2.0/#SOPHARM_43000
281 SPD Spider Ontology http://purl.obolibrary.org/obo/SPD_0000135
282 STATO The Statistical Methods Ontology
283 SWO Software ontology http://www.ebi.ac.uk/efo/swo/SWO_0000155
284 SYMP Symptom Ontology http://purl.obolibrary.org/obo/SYMP_0000024
285 T4FS terms4FAIRskills
286 TADS Tick Anatomy Ontology http://purl.obolibrary.org/obo/TADS_0000134
287 TAHE Terminology of Anatomy of Human Embryology
288 TAHH Terminology of Anatomy of Human Histology
289 TAO Teleost Anatomy Ontology http://purl.obolibrary.org/obo/TAO_0000142
290 TAXRANK Taxonomic rank vocabulary http://purl.obolibrary.org/obo/TAXRANK_0000005
291 TCMDPO Traditional Chiinese Medicine DPO
292 TFClass_human Ontology of Human Transcription Factors
293 TGMA Mosquito gross anatomy ontology http://purl.obolibrary.org/obo/TGMA_0001389
294 TO Plant Trait Ontology http://purl.obolibrary.org/obo/TO_0002649
295 TRANS Pathogen Transmission Ontology http://purl.obolibrary.org/obo/TRANS_0000010
296 TSO Transportation System Ontology
297 TTO Teleost taxonomy ontology http://purl.obolibrary.org/obo/TTO_102489
298 TXPO Toxic Process Ontology
299 UBERON Uberon multi-species anatomy ontology http://purl.obolibrary.org/obo/UBERON_0000029
300 uberon-basic Uber anatomy ontology, basic version
301 uberon_collected_metazoa uberon_collected_metazoa http://purl.obolibrary.org/obo/MA_0002768
302 uberon_depictions uberon_depictions
303 UO Units of measurement ontology http://purl.obolibrary.org/obo/UO_0000256
304 UPA Unipathway
305 UPHENO Unified Phenotype Ontology (uPheno)
306 VariO Variation Ontology http://purl.obolibrary.org/obo/VariO_0116
307 VBO Vertebrate Breed Ontology
308 VHOG Vertebrate Homologous Ontology Group Ontology http://purl.obolibrary.org/obo/VHOG_0001198
309 VICO Vaccination Informed Consent Ontology
310 VIDO Virus Infectious Disease Ontology
311 VIO Vaccine Investigation Ontology
312 VIO-ImmPort Vaccine Investigation Ontology - ImmPort
313 VIVO-ISF VIVO-ISF
314 VO Vaccine Ontology http://purl.obolibrary.org/obo/VO_0000423
315 VSAO Vertebrate Skeletal Anatomy Ontology- http://purl.obolibrary.org/obo/VAO_0000004
316 VT Vertebrate trait ontology
317 VTO Vertebrate Taxonomy Ontology http://purl.obolibrary.org/obo/VTO_0000001
318 WBbt C. elegans Gross Anatomy Ontology http://purl.obolibrary.org/obo/WBbt_0006365
319 WBls C. elegans development ontology http://purl.obolibrary.org/obo/WBls_0000074
320 WBPhenotype C. elegans phenotype http://purl.obolibrary.org/obo/WBPhenotype_0000738
321 XAO Xenopus Anatomy Ontology http://purl.obolibrary.org/obo/XAO_0004086
322 XCO Experimental condition ontology http://purl.obolibrary.org/obo/XCO_0000058
323 XL Cross-linker reagents ontology
324 XLMOD HUPO-PSI cross-linking and derivatization reagents controlled vocabulary
325 XPO Xenopus Phenotype Ontology
326 YPO Yeast phenotypes http://purl.obolibrary.org/obo/APO_0000098
327 ZEA Maize gross anatomy
328 ZECO Zebrafish Experimental Conditions Ontology
329 ZFA Zebrafish anatomy and development ontology http://purl.obolibrary.org/obo/ZFA_0000027
330 ZFS Zebrafish developmental stages ontology http://purl.obolibrary.org/obo/ZFS_0000022
331 ZP Zebrafish Phenotype Ontology